CYPome of the conifer pathogen Heterobasidion irregulare: Inventory, phylogeny, and transcriptional analysis of the response to biocontrol.
Identifieur interne : 000D19 ( Main/Exploration ); précédent : 000D18; suivant : 000D20CYPome of the conifer pathogen Heterobasidion irregulare: Inventory, phylogeny, and transcriptional analysis of the response to biocontrol.
Auteurs : Anthony C. Mgbeahuruike [Nigeria] ; Andriy Kovalchuk [Finlande] ; Wimal Ubhayasekera [Suède] ; David R. Nelson [États-Unis] ; Jagjit S. Yadav [États-Unis]Source :
- Fungal biology [ 1878-6146 ] ; 2017.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Basidiomycota (enzymologie), Basidiomycota (génétique), Basidiomycota (isolement et purification), Cytochrome P-450 enzyme system (analyse), Cytochrome P-450 enzyme system (génétique), Gènes fongiques (MeSH), Génome fongique (MeSH), Maladies des plantes (microbiologie), Tracheobionta (microbiologie).
- MESH :
- analyse : Cytochrome P-450 enzyme system.
- enzymologie : Basidiomycota.
- génétique : Basidiomycota, Cytochrome P-450 enzyme system.
- isolement et purification : Basidiomycota.
- microbiologie : Maladies des plantes, Tracheobionta.
- Analyse de profil d'expression de gènes, Gènes fongiques, Génome fongique.
English descriptors
- KwdEn :
- Basidiomycota (enzymology), Basidiomycota (genetics), Basidiomycota (isolation & purification), Cytochrome P-450 Enzyme System (analysis), Cytochrome P-450 Enzyme System (genetics), Gene Expression Profiling (MeSH), Genes, Fungal (MeSH), Genome, Fungal (MeSH), Plant Diseases (microbiology), Tracheophyta (microbiology).
- MESH :
- chemical , analysis : Cytochrome P-450 Enzyme System.
- enzymology : Basidiomycota.
- genetics : Basidiomycota, Cytochrome P-450 Enzyme System.
- isolation & purification : Basidiomycota.
- microbiology : Plant Diseases, Tracheophyta.
- Gene Expression Profiling, Genes, Fungal, Genome, Fungal.
Abstract
The molecular mechanisms underlying the interaction of the pathogen, Heterobasidion annosum s.l., the conifer tree and the biocontrol fungus, Phlebiopsis gigantea have not been fully elucidated. Members of the cytochrome P450 (CYP) protein family may contribute to the detoxification of components of chemical defence of conifer trees by H. annosum during infection. Additionally, they may also be involved in the interaction between H. annosum and P. gigantea. A genome-wide analysis of CYPs in Heterobasidion irregulare was carried out alongside gene expression studies. According to the Standardized CYP Nomenclature criteria, the H. irregulare genome has 121 CYP genes and 17 CYP pseudogenes classified into 11 clans, 35 families, and 64 subfamilies. Tandem CYP arrays originating from gene duplications and belonging to the same family and subfamily were found. Phylogenetic analysis showed that all the families of H. irregulare CYPs were monophyletic groups except for the family CYP5144. Microarray analysis revealed the transcriptional pattern for 130 transcripts of CYP-encoding genes during growth on culture filtrate produced by P. gigantea. The high level of P450 gene diversity identified in this study could result from extensive gene duplications presumably caused by the high metabolic demands of H. irregulare in its ecological niches.
DOI: 10.1016/j.funbio.2016.11.006
PubMed: 28089047
Affiliations:
- Finlande, Nigeria, Suède, États-Unis
- East Middle Sweden, Ohio, Svealand, Tennessee, Uusimaa
- Helsinki, Uppsala
- Université d'Helsinki, Université d'Uppsala
Links toward previous steps (curation, corpus...)
Le document en format XML
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Box 27, FIN-00014 Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Ubhayasekera, Wimal" sort="Ubhayasekera, Wimal" uniqKey="Ubhayasekera W" first="Wimal" last="Ubhayasekera">Wimal Ubhayasekera</name><affiliation wicri:level="4"><nlm:affiliation>Structure and Molecular Biology Program, Department of Cell and Molecular Biology, Uppsala University, Box 596, Biomedical Center, SE-751 24, Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Structure and Molecular Biology Program, Department of Cell and Molecular Biology, Uppsala University, Box 596, Biomedical Center, SE-751 24, Uppsala</wicri:regionArea><orgName type="university">Université d'Uppsala</orgName><placeName><settlement type="city">Uppsala</settlement><region nuts="1">Svealand</region><region nuts="1">East Middle Sweden</region></placeName></affiliation></author><author><name sortKey="Nelson, David R" sort="Nelson, David R" uniqKey="Nelson D" first="David R" last="Nelson">David R. 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Yadav</name><affiliation wicri:level="2"><nlm:affiliation>Environmental Genetics and Molecular Toxicology Division, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0056, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Environmental Genetics and Molecular Toxicology Division, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0056</wicri:regionArea><placeName><region type="state">Ohio</region></placeName></affiliation></author></analytic><series><title level="j">Fungal biology</title><idno type="ISSN">1878-6146</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (enzymology)</term><term>Basidiomycota (genetics)</term><term>Basidiomycota (isolation & purification)</term><term>Cytochrome P-450 Enzyme System (analysis)</term><term>Cytochrome P-450 Enzyme System (genetics)</term><term>Gene Expression Profiling (MeSH)</term><term>Genes, Fungal (MeSH)</term><term>Genome, Fungal (MeSH)</term><term>Plant Diseases (microbiology)</term><term>Tracheophyta (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Basidiomycota (enzymologie)</term><term>Basidiomycota (génétique)</term><term>Basidiomycota (isolement et purification)</term><term>Cytochrome P-450 enzyme system (analyse)</term><term>Cytochrome P-450 enzyme system (génétique)</term><term>Gènes fongiques (MeSH)</term><term>Génome fongique (MeSH)</term><term>Maladies des plantes (microbiologie)</term><term>Tracheobionta (microbiologie)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Cytochrome P-450 Enzyme System</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>Cytochrome P-450 enzyme system</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term><term>Cytochrome P-450 Enzyme System</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Basidiomycota</term><term>Cytochrome P-450 enzyme system</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Tracheobionta</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Tracheophyta</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Genes, Fungal</term><term>Genome, Fungal</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Gènes fongiques</term><term>Génome fongique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The molecular mechanisms underlying the interaction of the pathogen, Heterobasidion annosum s.l., the conifer tree and the biocontrol fungus, Phlebiopsis gigantea have not been fully elucidated. Members of the cytochrome P450 (CYP) protein family may contribute to the detoxification of components of chemical defence of conifer trees by H. annosum during infection. Additionally, they may also be involved in the interaction between H. annosum and P. gigantea. A genome-wide analysis of CYPs in Heterobasidion irregulare was carried out alongside gene expression studies. According to the Standardized CYP Nomenclature criteria, the H. irregulare genome has 121 CYP genes and 17 CYP pseudogenes classified into 11 clans, 35 families, and 64 subfamilies. Tandem CYP arrays originating from gene duplications and belonging to the same family and subfamily were found. Phylogenetic analysis showed that all the families of H. irregulare CYPs were monophyletic groups except for the family CYP5144. Microarray analysis revealed the transcriptional pattern for 130 transcripts of CYP-encoding genes during growth on culture filtrate produced by P. gigantea. The high level of P450 gene diversity identified in this study could result from extensive gene duplications presumably caused by the high metabolic demands of H. irregulare in its ecological niches.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28089047</PMID><DateCompleted><Year>2017</Year><Month>09</Month><Day>26</Day></DateCompleted><DateRevised><Year>2019</Year><Month>12</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">1878-6146</ISSN><JournalIssue CitedMedium="Internet"><Volume>121</Volume><Issue>2</Issue><PubDate><Year>2017</Year><Month>02</Month></PubDate></JournalIssue><Title>Fungal biology</Title><ISOAbbreviation>Fungal Biol</ISOAbbreviation></Journal><ArticleTitle>CYPome of the conifer pathogen Heterobasidion irregulare: Inventory, phylogeny, and transcriptional analysis of the response to biocontrol.</ArticleTitle><Pagination><MedlinePgn>158-171</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S1878-6146(16)30173-8</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.funbio.2016.11.006</ELocationID><Abstract><AbstractText>The molecular mechanisms underlying the interaction of the pathogen, Heterobasidion annosum s.l., the conifer tree and the biocontrol fungus, Phlebiopsis gigantea have not been fully elucidated. Members of the cytochrome P450 (CYP) protein family may contribute to the detoxification of components of chemical defence of conifer trees by H. annosum during infection. Additionally, they may also be involved in the interaction between H. annosum and P. gigantea. A genome-wide analysis of CYPs in Heterobasidion irregulare was carried out alongside gene expression studies. According to the Standardized CYP Nomenclature criteria, the H. irregulare genome has 121 CYP genes and 17 CYP pseudogenes classified into 11 clans, 35 families, and 64 subfamilies. Tandem CYP arrays originating from gene duplications and belonging to the same family and subfamily were found. Phylogenetic analysis showed that all the families of H. irregulare CYPs were monophyletic groups except for the family CYP5144. Microarray analysis revealed the transcriptional pattern for 130 transcripts of CYP-encoding genes during growth on culture filtrate produced by P. gigantea. The high level of P450 gene diversity identified in this study could result from extensive gene duplications presumably caused by the high metabolic demands of H. irregulare in its ecological niches.</AbstractText><CopyrightInformation>Copyright © 2016 British Mycological Society. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Mgbeahuruike</LastName><ForeName>Anthony C</ForeName><Initials>AC</Initials><AffiliationInfo><Affiliation>Department of Microbiology, Faculty of Biological Sciences, University of Nigeria, Nsukka, PMB, 420001, Enugu State, Nigeria; Department of Veterinary Pathology and Microbiology, Faculty of Veterinary Medicine, University of Nigeria, Nsukka, PMB, 420001, Enugu State, Nigeria. Electronic address: Anthony.mgbeahuruike@unn.edu.ng.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kovalchuk</LastName><ForeName>Andriy</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014 Helsinki, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ubhayasekera</LastName><ForeName>Wimal</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Structure and Molecular Biology Program, Department of Cell and Molecular Biology, Uppsala University, Box 596, Biomedical Center, SE-751 24, Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nelson</LastName><ForeName>David R</ForeName><Initials>DR</Initials><AffiliationInfo><Affiliation>Department of Microbiology, Immunology and Biochemistry, University of Tennessee, Memphis, TN 38163, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yadav</LastName><ForeName>Jagjit S</ForeName><Initials>JS</Initials><AffiliationInfo><Affiliation>Environmental Genetics and Molecular Toxicology Division, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0056, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>P30 ES006096</GrantID><Acronym>ES</Acronym><Agency>NIEHS NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>12</Month><Day>08</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Fungal Biol</MedlineTA><NlmUniqueID>101524465</NlmUniqueID></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>9035-51-2</RegistryNumber><NameOfSubstance UI="D003577">Cytochrome P-450 Enzyme System</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000201" MajorTopicYN="Y">enzymology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003577" MajorTopicYN="N">Cytochrome P-450 Enzyme System</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="Y">analysis</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005800" MajorTopicYN="N">Genes, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="N">Genome, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D064028" MajorTopicYN="N">Tracheophyta</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Gene expression</Keyword><Keyword MajorTopicYN="Y">Genome</Keyword><Keyword MajorTopicYN="Y">Heterobasidion annosum s.l.</Keyword><Keyword MajorTopicYN="Y">Homology modelling</Keyword><Keyword MajorTopicYN="Y">P450</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>03</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2016</Year><Month>10</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>11</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>1</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>1</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>9</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28089047</ArticleId><ArticleId IdType="pii">S1878-6146(16)30173-8</ArticleId><ArticleId IdType="doi">10.1016/j.funbio.2016.11.006</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Finlande</li><li>Nigeria</li><li>Suède</li><li>États-Unis</li></country><region><li>East Middle Sweden</li><li>Ohio</li><li>Svealand</li><li>Tennessee</li><li>Uusimaa</li></region><settlement><li>Helsinki</li><li>Uppsala</li></settlement><orgName><li>Université d'Helsinki</li><li>Université d'Uppsala</li></orgName></list><tree><country name="Nigeria"><noRegion><name sortKey="Mgbeahuruike, Anthony C" sort="Mgbeahuruike, Anthony C" uniqKey="Mgbeahuruike A" first="Anthony C" last="Mgbeahuruike">Anthony C. Mgbeahuruike</name></noRegion></country><country name="Finlande"><region name="Uusimaa"><name sortKey="Kovalchuk, Andriy" sort="Kovalchuk, Andriy" uniqKey="Kovalchuk A" first="Andriy" last="Kovalchuk">Andriy Kovalchuk</name></region></country><country name="Suède"><region name="Svealand"><name sortKey="Ubhayasekera, Wimal" sort="Ubhayasekera, Wimal" uniqKey="Ubhayasekera W" first="Wimal" last="Ubhayasekera">Wimal Ubhayasekera</name></region></country><country name="États-Unis"><region name="Tennessee"><name sortKey="Nelson, David R" sort="Nelson, David R" uniqKey="Nelson D" first="David R" last="Nelson">David R. Nelson</name></region><name sortKey="Yadav, Jagjit S" sort="Yadav, Jagjit S" uniqKey="Yadav J" first="Jagjit S" last="Yadav">Jagjit S. Yadav</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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